HL_9SPI_022

3D structure

PDB id

9SPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING URIDINE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CC(PSU)CAG

Length

6 nucleotides

Bulged bases

9SPI|1|L5|C|1676, 9SPI|1|L5|A|1679

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SPI_022 not in the Motif Atlas

Homologous match to HL_9PN5_022

Geometric discrepancy: 0.4056

The information below is about HL_9PN5_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27530.4

Basepair signature

cWW-F-F

Number of instances in this motif group

12

Unit IDs

9SPI|1|L5|C|1675
9SPI|1|L5|C|1676
9SPI|1|L5|PSU|1677
9SPI|1|L5|C|1678
9SPI|1|L5|A|1679
9SPI|1|L5|G|1680

Current chains

Chain L5

28S rRNA

Nearby chains

Chain La

Large ribosomal subunit protein uL15

Chain Lb

Large ribosomal subunit protein eL29

Chain Lo

Large ribosomal subunit protein eL42