HL_9SPI_041

3D structure

PDB id

9SPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING URIDINE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

(PSU)UUAAUUAAAA

Length

11 nucleotides

Bulged bases

9SPI|1|L5|A|3642, 9SPI|1|L5|A|3643, 9SPI|1|L5|U|3644, 9SPI|1|L5|A|3648

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SPI|1|L5|PSU|3639
9SPI|1|L5|U|3640
9SPI|1|L5|U|3641
9SPI|1|L5|A|3642
9SPI|1|L5|A|3643
9SPI|1|L5|U|3644
9SPI|1|L5|U|3645
9SPI|1|L5|A|3646
9SPI|1|L5|A|3647
9SPI|1|L5|A|3648
9SPI|1|L5|A|3649

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

Large ribosomal subunit protein uL2

Chain Lj

Large ribosomal subunit protein eL37