HL_9SPI_046

3D structure

PDB id

9SPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING URIDINE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

9SPI|1|L5|A|3876, 9SPI|1|L5|A|3877, 9SPI|1|L5|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SPI|1|L5|G|3873
9SPI|1|L5|G|3874
9SPI|1|L5|G|3875
9SPI|1|L5|A|3876
9SPI|1|L5|A|3877
9SPI|1|L5|C|3878
9SPI|1|L5|G|3879
9SPI|1|L5|G|3880
9SPI|1|L5|G|3881
9SPI|1|L5|C|3882

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain Le

60S ribosomal protein L32