HL_9SPI_051
3D structure
- PDB id
- 9SPI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING URIDINE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UUCAG(OMU)ACG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9SPI_051 not in the Motif Atlas
- Homologous match to HL_8GLP_063
- Geometric discrepancy: 0.0315
- The information below is about HL_8GLP_063
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_15296.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
9SPI|1|L5|U|4301
9SPI|1|L5|U|4302
9SPI|1|L5|C|4303
9SPI|1|L5|A|4304
9SPI|1|L5|G|4305
9SPI|1|L5|OMU|4306
9SPI|1|L5|A|4307
9SPI|1|L5|C|4308
9SPI|1|L5|G|4309
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LQ
- 60S ribosomal protein L18
- Chain LT
- 60S ribosomal protein L21
- Chain La
- Large ribosomal subunit protein uL15
- Chain Lb
- Large ribosomal subunit protein eL29
- Chain Lo
- Large ribosomal subunit protein eL42
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