HL_9SPI_057

3D structure

PDB id

9SPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING URIDINE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SPI_057 not in the Motif Atlas

Homologous match to HL_8GLP_069

Geometric discrepancy: 0.0381

The information below is about HL_8GLP_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9SPI|1|L5|C|4540
9SPI|1|L5|G|4541
9SPI|1|L5|U|4542
9SPI|1|L5|G|4543
9SPI|1|L5|A|4544
9SPI|1|L5|G|4545

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

Large ribosomal subunit protein uL2

Chain Pt

Transfer RNA; tRNA