HL_9SPI_060

3D structure

PDB id

9SPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING URIDINE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

C(PSU)GAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

9SPI|1|L5|G|4694, 9SPI|1|L5|C|4698

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SPI|1|L5|C|4688
9SPI|1|L5|PSU|4689
9SPI|1|L5|G|4690
9SPI|1|L5|A|4691
9SPI|1|L5|A|4692
9SPI|1|L5|C|4693
9SPI|1|L5|G|4694
9SPI|1|L5|C|4695
9SPI|1|L5|C|4696
9SPI|1|L5|U|4697
9SPI|1|L5|C|4698
9SPI|1|L5|U|4699
9SPI|1|L5|A|4700
9SPI|1|L5|A|4701
9SPI|1|L5|G|4702

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain LO

60S ribosomal protein L13a

Chain Lm

Ubiquitin-ribosomal protein eL40 fusion protein