HL_9SRA_001

3D structure

PDB id

9SRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUAGAAGAC

Length

9 nucleotides

Bulged bases

9SRA|1|1|U|13

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRA_001 not in the Motif Atlas

Geometric match to HL_4V9F_069

Geometric discrepancy: 0.0939

The information below is about HL_4V9F_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37889.3

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

13

Unit IDs

9SRA|1|1|G|12
9SRA|1|1|U|13
9SRA|1|1|A|14
9SRA|1|1|G|15
9SRA|1|1|A|16
9SRA|1|1|A|17
9SRA|1|1|G|18
9SRA|1|1|A|19
9SRA|1|1|C|20

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BC

Large ribosomal subunit protein uL3

Chain BS

Large ribosomal subunit protein uL22

Chain Ba

Large ribosomal subunit protein eL31