HL_9SRA_005
3D structure
- PDB id
- 9SRA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CGCAGGCAG
- Length
- 9 nucleotides
- Bulged bases
- 9SRA|1|1|G|205
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9SRA_005 not in the Motif Atlas
- Homologous match to HL_4V9F_002
- Geometric discrepancy: 0.1984
- The information below is about HL_4V9F_002
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_52651.4
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 31
Unit IDs
9SRA|1|1|C|201
9SRA|1|1|G|202
9SRA|1|1|C|203
9SRA|1|1|A|204
9SRA|1|1|G|205
9SRA|1|1|G|206
9SRA|1|1|C|207
9SRA|1|1|A|208
9SRA|1|1|G|209
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BU
- Large ribosomal subunit protein uL24
- Chain BW
- Large ribosomal subunit protein uL29
- Chain Bf
- Large ribosomal subunit protein eL39
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