HL_9SRA_012

3D structure

PDB id

9SRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGACGAG

Length

7 nucleotides

Bulged bases

9SRA|1|1|C|393

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRA_012 not in the Motif Atlas

Homologous match to HL_4V9F_009

Geometric discrepancy: 0.3966

The information below is about HL_4V9F_009

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9SRA|1|1|C|390
9SRA|1|1|G|391
9SRA|1|1|A|392
9SRA|1|1|C|393
9SRA|1|1|G|394
9SRA|1|1|A|395
9SRA|1|1|G|396

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain Bk

C2H2-type domain-containing protein