HL_9SRA_016
3D structure
- PDB id
- 9SRA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GGCAUCGGC
- Length
- 9 nucleotides
- Bulged bases
- 9SRA|1|1|G|565
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9SRA_016 not in the Motif Atlas
- Homologous match to HL_4V9F_014
- Geometric discrepancy: 0.2097
- The information below is about HL_4V9F_014
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_52651.4
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 31
Unit IDs
9SRA|1|1|G|564
9SRA|1|1|G|565
9SRA|1|1|C|566
9SRA|1|1|A|567
9SRA|1|1|U|568
9SRA|1|1|C|569
9SRA|1|1|G|570
9SRA|1|1|G|571
9SRA|1|1|C|572
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BL
- Large ribosomal subunit protein uL15
- Chain BM
- Large ribosomal subunit protein eL15
- Chain Bj
- Large ribosomal subunit protein eL42
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