HL_9SRA_021

3D structure

PDB id

9SRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGUUAAGC

Length

8 nucleotides

Bulged bases

9SRA|1|1|A|824

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRA_021 not in the Motif Atlas

Homologous match to HL_4V9F_019

Geometric discrepancy: 0.4708

The information below is about HL_4V9F_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25795.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9SRA|1|1|G|819
9SRA|1|1|G|820
9SRA|1|1|U|821
9SRA|1|1|U|822
9SRA|1|1|A|823
9SRA|1|1|A|824
9SRA|1|1|G|825
9SRA|1|1|C|826

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BD

Large ribosomal subunit protein uL4

Chain BU

Large ribosomal subunit protein uL24