HL_9SRA_027

3D structure

PDB id

9SRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

9SRA|1|1|A|1032, 9SRA|1|1|G|1035

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRA_027 not in the Motif Atlas

Homologous match to HL_4V9F_025

Geometric discrepancy: 0.0868

The information below is about HL_4V9F_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79773.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

8

Unit IDs

9SRA|1|1|U|1030
9SRA|1|1|G|1031
9SRA|1|1|A|1032
9SRA|1|1|A|1033
9SRA|1|1|A|1034
9SRA|1|1|G|1035
9SRA|1|1|G|1036

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BB

Large ribosomal subunit protein uL2