HL_9SRA_037

3D structure

PDB id

9SRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGUCGUC

Length

7 nucleotides

Bulged bases

9SRA|1|1|G|1585, 9SRA|1|1|U|1589

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRA_037 not in the Motif Atlas

Homologous match to HL_4V9F_035

Geometric discrepancy: 0.1261

The information below is about HL_4V9F_035

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

9SRA|1|1|G|1584
9SRA|1|1|G|1585
9SRA|1|1|U|1586
9SRA|1|1|C|1587
9SRA|1|1|G|1588
9SRA|1|1|U|1589
9SRA|1|1|C|1590

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BQ

Large ribosomal subunit protein eL19

Chain BS

Large ribosomal subunit protein uL22

Chain Bf

Large ribosomal subunit protein eL39