HL_9SRA_040

3D structure

PDB id

9SRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGCAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRA_040 not in the Motif Atlas

Geometric match to HL_2Z75_004

Geometric discrepancy: 0.0662

The information below is about HL_2Z75_004

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9SRA|1|1|G|1682
9SRA|1|1|G|1683
9SRA|1|1|C|1684
9SRA|1|1|A|1685
9SRA|1|1|A|1686
9SRA|1|1|C|1687

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain B5

Large ribosomal subunit protein eL14

Chain Bd

Large ribosomal subunit protein eL34