HL_9SRA_045
3D structure
- PDB id
- 9SRA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- (4AC)GACACAG
- Length
- 8 nucleotides
- Bulged bases
- 9SRA|1|1|A|1889, 9SRA|1|1|A|1891
- QA status
- Modified nucleotides: 4AC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9SRA_045 not in the Motif Atlas
- Homologous match to HL_4V9F_042
- Geometric discrepancy: 0.102
- The information below is about HL_4V9F_042
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_28592.4
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
9SRA|1|1|4AC|1885
9SRA|1|1|G|1886
9SRA|1|1|A|1887
9SRA|1|1|C|1888
9SRA|1|1|A|1889
9SRA|1|1|C|1890
9SRA|1|1|A|1891
9SRA|1|1|G|1892
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BS
- Large ribosomal subunit protein uL22
- Chain Be
- Large ribosomal subunit protein eL37
- Chain Bf
- Large ribosomal subunit protein eL39
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