HL_9SRA_046

3D structure

PDB id

9SRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UGAGAAG

Length

7 nucleotides

Bulged bases

9SRA|1|1|A|1908

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRA_046 not in the Motif Atlas

Geometric match to HL_9AXU_039

Geometric discrepancy: 0.0768

The information below is about HL_9AXU_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9SRA|1|1|U|1904
9SRA|1|1|G|1905
9SRA|1|1|A|1906
9SRA|1|1|G|1907
9SRA|1|1|A|1908
9SRA|1|1|A|1909
9SRA|1|1|G|1910

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BQ

Large ribosomal subunit protein eL19