HL_9SRA_047
3D structure
- PDB id
- 9SRA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CUUCGG
- Length
- 6 nucleotides
- Bulged bases
- 9SRA|1|1|U|1969
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9SRA_047 not in the Motif Atlas
- Homologous match to HL_4V9F_044
- Geometric discrepancy: 0.059
- The information below is about HL_4V9F_044
- Detailed Annotation
- UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_61337.6
- Basepair signature
- cWW-tSW-F
- Number of instances in this motif group
- 67
Unit IDs
9SRA|1|1|C|1967
9SRA|1|1|U|1968
9SRA|1|1|U|1969
9SRA|1|1|C|1970
9SRA|1|1|G|1971
9SRA|1|1|G|1972
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain A0
- eS32
- Chain Bi
- Large ribosomal subunit protein eL43
Coloring options: