HL_9SRA_052

3D structure

PDB id

9SRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGUACAAC

Length

8 nucleotides

Bulged bases

9SRA|1|1|A|2119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRA_052 not in the Motif Atlas

Homologous match to HL_4V9F_049

Geometric discrepancy: 0.3627

The information below is about HL_4V9F_049

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_28253.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

9SRA|1|1|G|2116
9SRA|1|1|G|2117
9SRA|1|1|U|2118
9SRA|1|1|A|2119
9SRA|1|1|C|2120
9SRA|1|1|A|2121
9SRA|1|1|A|2122
9SRA|1|1|C|2123

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain Bj

Large ribosomal subunit protein eL42