HL_9SRA_061

3D structure

PDB id

9SRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UGCAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRA_061 not in the Motif Atlas

Homologous match to HL_4V9F_058

Geometric discrepancy: 0.1692

The information below is about HL_4V9F_058

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

9SRA|1|1|U|2555
9SRA|1|1|G|2556
9SRA|1|1|C|2557
9SRA|1|1|A|2558
9SRA|1|1|A|2559
9SRA|1|1|G|2560
9SRA|1|1|G|2561
9SRA|1|1|G|2562

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BN

Large ribosomal subunit protein uL16

Chain BO

Large ribosomal subunit protein uL18

Chain BR

Large ribosomal subunit protein eL21