HL_9SRA_063
3D structure
- PDB id
- 9SRA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- C(4AC)GAAAGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9SRA_063 not in the Motif Atlas
- Geometric match to HL_3RG5_006
- Geometric discrepancy: 0.2596
- The information below is about HL_3RG5_006
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- tRNA anticodon loop
- Motif group
- HL_87268.4
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 16
Unit IDs
9SRA|1|1|C|2607
9SRA|1|1|4AC|2608
9SRA|1|1|G|2609
9SRA|1|1|A|2610
9SRA|1|1|A|2611
9SRA|1|1|A|2612
9SRA|1|1|G|2613
9SRA|1|1|G|2614
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BO
- Large ribosomal subunit protein uL18
- Chain BR
- Large ribosomal subunit protein eL21
- Chain Bj
- Large ribosomal subunit protein eL42
Coloring options: