HL_9SRB_002

3D structure

PDB id

9SRB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA and SBDS

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GGUCAAC

Length

7 nucleotides

Bulged bases

9SRB|1|1|C|56, 9SRB|1|1|A|57

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRB_002 not in the Motif Atlas

Geometric match to HL_9H3G_069

Geometric discrepancy: 0.2749

The information below is about HL_9H3G_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61337.6

Basepair signature

cWW-tSW-F

Number of instances in this motif group

67

Unit IDs

9SRB|1|1|G|53
9SRB|1|1|G|54
9SRB|1|1|U|55
9SRB|1|1|C|56
9SRB|1|1|A|57
9SRB|1|1|A|58
9SRB|1|1|C|59

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain AJ

30S ribosomal protein S8e

Chain BQ

Large ribosomal subunit protein eL19