HL_9SRB_012

3D structure

PDB id

9SRB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA and SBDS

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CGACGAG

Length

7 nucleotides

Bulged bases

9SRB|1|1|C|393

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRB_012 not in the Motif Atlas

Homologous match to HL_4V9F_009

Geometric discrepancy: 0.3988

The information below is about HL_4V9F_009

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9SRB|1|1|C|390
9SRB|1|1|G|391
9SRB|1|1|A|392
9SRB|1|1|C|393
9SRB|1|1|G|394
9SRB|1|1|A|395
9SRB|1|1|G|396

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain Bk

C2H2-type domain-containing protein