HL_9SRB_017

3D structure

PDB id

9SRB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA and SBDS

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

(LHH)GUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: LHH

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRB_017 not in the Motif Atlas

Homologous match to HL_4V9F_015

Geometric discrepancy: 0.0762

The information below is about HL_4V9F_015

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9SRB|1|1|LHH|616
9SRB|1|1|G|617
9SRB|1|1|U|618
9SRB|1|1|G|619
9SRB|1|1|A|620
9SRB|1|1|G|621

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BD

Large ribosomal subunit protein uL4

Chain Be

Large ribosomal subunit protein eL37

Chain Bf

Large ribosomal subunit protein eL39