HL_9SRB_065
3D structure
- PDB id
- 9SRB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA and SBDS
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- AGCCCAUAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9SRB_065 not in the Motif Atlas
- Homologous match to HL_4V9F_062
- Geometric discrepancy: 0.2196
- The information below is about HL_4V9F_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_52011.3
- Basepair signature
- cWW-tSH-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
9SRB|1|1|A|2703
9SRB|1|1|G|2704
9SRB|1|1|C|2705
9SRB|1|1|C|2706
9SRB|1|1|C|2707
9SRB|1|1|A|2708
9SRB|1|1|U|2709
9SRB|1|1|A|2710
9SRB|1|1|U|2711
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain A
- Ribosome maturation protein SDO1 homolog
- Chain BN
- Large ribosomal subunit protein uL16
- Chain Bg
- Large ribosomal subunit protein eL40
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