HL_9SRC_007

3D structure

PDB id

9SRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA in PTC conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CUUAUG

Length

6 nucleotides

Bulged bases

9SRC|1|1|U|252

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRC_007 not in the Motif Atlas

Geometric match to HL_4V9F_007

Geometric discrepancy: 0.3844

The information below is about HL_4V9F_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36488.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

9SRC|1|1|C|248
9SRC|1|1|U|249
9SRC|1|1|U|250
9SRC|1|1|A|251
9SRC|1|1|U|252
9SRC|1|1|G|253

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BT

Large ribosomal subunit protein uL23

Chain BW

Large ribosomal subunit protein uL29