HL_9SRC_024

3D structure

PDB id

9SRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA in PTC conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRC_024 not in the Motif Atlas

Homologous match to HL_4V9F_022

Geometric discrepancy: 0.4078

The information below is about HL_4V9F_022

Detailed Annotation

GNRA

Broad Annotation

GNRA

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9SRC|1|1|C|891
9SRC|1|1|G|892
9SRC|1|1|A|893
9SRC|1|1|A|894
9SRC|1|1|A|895
9SRC|1|1|G|896

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain Bj

Large ribosomal subunit protein eL42