HL_9SRC_031

3D structure

PDB id

9SRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA in PTC conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GGAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRC_031 not in the Motif Atlas

Homologous match to HL_4V9F_029

Geometric discrepancy: 0.2713

The information below is about HL_4V9F_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47171.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

9SRC|1|1|G|1229
9SRC|1|1|G|1230
9SRC|1|1|A|1231
9SRC|1|1|A|1232
9SRC|1|1|C|1233
9SRC|1|1|A|1234
9SRC|1|1|A|1235
9SRC|1|1|C|1236

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain 3

5S ribosomal RNA; 5S rRNA

Chain BY

Large ribosomal subunit protein uL30

Chain Bb

Large ribosomal subunit protein eL32

Chain Bc

Large ribosomal subunit protein eL33