HL_9SRC_045

3D structure

PDB id

9SRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA in PTC conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

(4AC)GACACAG

Length

8 nucleotides

Bulged bases

9SRC|1|1|A|1889, 9SRC|1|1|A|1891

QA status

Modified nucleotides: 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRC_045 not in the Motif Atlas

Homologous match to HL_4V9F_042

Geometric discrepancy: 0.1006

The information below is about HL_4V9F_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

9SRC|1|1|4AC|1885
9SRC|1|1|G|1886
9SRC|1|1|A|1887
9SRC|1|1|C|1888
9SRC|1|1|A|1889
9SRC|1|1|C|1890
9SRC|1|1|A|1891
9SRC|1|1|G|1892

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BS

Large ribosomal subunit protein uL22

Chain Be

Large ribosomal subunit protein eL37

Chain Bf

Large ribosomal subunit protein eL39