HL_9SRC_055

3D structure

PDB id

9SRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA in PTC conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GCGCGCAUGC

Length

10 nucleotides

Bulged bases

9SRC|1|1|C|2270, 9SRC|1|1|G|2271, 9SRC|1|1|C|2272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRC_055 not in the Motif Atlas

Homologous match to HL_4V9F_052

Geometric discrepancy: 0.2814

The information below is about HL_4V9F_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

11

Unit IDs

9SRC|1|1|G|2267
9SRC|1|1|C|2268
9SRC|1|1|G|2269
9SRC|1|1|C|2270
9SRC|1|1|G|2271
9SRC|1|1|C|2272
9SRC|1|1|A|2273
9SRC|1|1|U|2274
9SRC|1|1|G|2275
9SRC|1|1|C|2276

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BC

Large ribosomal subunit protein uL3

Chain Bb

Large ribosomal subunit protein eL32