HL_9SRC_060

3D structure

PDB id

9SRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA in PTC conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GUCAGGAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRC_060 not in the Motif Atlas

Homologous match to HL_4V9F_057

Geometric discrepancy: 0.1722

The information below is about HL_4V9F_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02452.3

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9SRC|1|1|G|2535
9SRC|1|1|U|2536
9SRC|1|1|C|2537
9SRC|1|1|A|2538
9SRC|1|1|G|2539
9SRC|1|1|G|2540
9SRC|1|1|A|2541
9SRC|1|1|A|2542
9SRC|1|1|U|2543

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BE

Large ribosomal subunit protein uL5