HL_9SRC_079

3D structure

PDB id

9SRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA in PTC conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRC|1|2|C|329
9SRC|1|2|A|330
9SRC|1|2|C|331
9SRC|1|2|U|332
9SRC|1|2|G|333
9SRC|1|2|A|334
9SRC|1|2|G|335
9SRC|1|2|A|336
9SRC|1|2|C|337
9SRC|1|2|A|338
9SRC|1|2|C|339
9SRC|1|2|G|340
9SRC|1|2|G|341
9SRC|1|2|G|342

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain AE

30S ribosomal protein S4e

Chain AG

30S ribosomal protein S6e

Chain AJ

30S ribosomal protein S8e