HL_9SRD_002

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GGUCAAC

Length

7 nucleotides

Bulged bases

9SRD|1|1|C|56, 9SRD|1|1|A|57

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRD_002 not in the Motif Atlas

Geometric match to HL_9H3G_003

Geometric discrepancy: 0.3413

The information below is about HL_9H3G_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_23875.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

16

Unit IDs

9SRD|1|1|G|53
9SRD|1|1|G|54
9SRD|1|1|U|55
9SRD|1|1|C|56
9SRD|1|1|A|57
9SRD|1|1|A|58
9SRD|1|1|C|59

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain AJ

30S ribosomal protein S8e

Chain BQ

Large ribosomal subunit protein eL19