HL_9SRD_004

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

UGGCAAGCUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRD_004 not in the Motif Atlas

Homologous match to HL_4V9F_001

Geometric discrepancy: 0.129

The information below is about HL_4V9F_001

Detailed Annotation

Pseudoknot with intercalation

Broad Annotation

No text annotation

Motif group

HL_17803.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9SRD|1|1|U|173
9SRD|1|1|G|174
9SRD|1|1|G|175
9SRD|1|1|C|176
9SRD|1|1|A|177
9SRD|1|1|A|178
9SRD|1|1|G|179
9SRD|1|1|C|180
9SRD|1|1|U|181
9SRD|1|1|G|182

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BT

Large ribosomal subunit protein uL23

Chain BW

Large ribosomal subunit protein uL29

Chain Bf

Large ribosomal subunit protein eL39