HL_9SRD_005

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CGCAGGCAG

Length

9 nucleotides

Bulged bases

9SRD|1|1|G|205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRD_005 not in the Motif Atlas

Homologous match to HL_4V9F_002

Geometric discrepancy: 0.1905

The information below is about HL_4V9F_002

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

9SRD|1|1|C|201
9SRD|1|1|G|202
9SRD|1|1|C|203
9SRD|1|1|A|204
9SRD|1|1|G|205
9SRD|1|1|G|206
9SRD|1|1|C|207
9SRD|1|1|A|208
9SRD|1|1|G|209

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BU

Large ribosomal subunit protein uL24

Chain BW

Large ribosomal subunit protein uL29

Chain Bf

Large ribosomal subunit protein eL39