HL_9SRD_006

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GACCUC

Length

6 nucleotides

Bulged bases

9SRD|1|1|C|238, 9SRD|1|1|C|239, 9SRD|1|1|U|240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRD_006 not in the Motif Atlas

Homologous match to HL_4V9F_003

Geometric discrepancy: 0.3382

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.10

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

9SRD|1|1|G|236
9SRD|1|1|A|237
9SRD|1|1|C|238
9SRD|1|1|C|239
9SRD|1|1|U|240
9SRD|1|1|C|241

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BT

Large ribosomal subunit protein uL23

Chain Be

Large ribosomal subunit protein eL37

Chain Bf

Large ribosomal subunit protein eL39