HL_9SRD_007

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CUUAUG

Length

6 nucleotides

Bulged bases

9SRD|1|1|U|252

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRD_007 not in the Motif Atlas

Geometric match to HL_7A0S_007

Geometric discrepancy: 0.3629

The information below is about HL_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_23875.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

16

Unit IDs

9SRD|1|1|C|248
9SRD|1|1|U|249
9SRD|1|1|U|250
9SRD|1|1|A|251
9SRD|1|1|U|252
9SRD|1|1|G|253

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BT

Large ribosomal subunit protein uL23

Chain BW

Large ribosomal subunit protein uL29