HL_9SRD_009

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

9SRD|1|1|A|300, 9SRD|1|1|A|303

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRD_009 not in the Motif Atlas

Homologous match to HL_4V9F_006

Geometric discrepancy: 0.0977

The information below is about HL_4V9F_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02262.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

36

Unit IDs

9SRD|1|1|G|298
9SRD|1|1|A|299
9SRD|1|1|A|300
9SRD|1|1|A|301
9SRD|1|1|C|302
9SRD|1|1|A|303
9SRD|1|1|U|304
9SRD|1|1|C|305

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BL

Large ribosomal subunit protein uL15

Chain BM

Large ribosomal subunit protein eL15

Chain Bj

Large ribosomal subunit protein eL42