HL_9SRD_010

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CAAAAG

Length

6 nucleotides

Bulged bases

9SRD|1|1|A|332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRD_010 not in the Motif Atlas

Geometric match to HL_4WF9_007

Geometric discrepancy: 0.1277

The information below is about HL_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_23875.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

16

Unit IDs

9SRD|1|1|C|329
9SRD|1|1|A|330
9SRD|1|1|A|331
9SRD|1|1|A|332
9SRD|1|1|A|333
9SRD|1|1|G|334

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BL

Large ribosomal subunit protein uL15

Chain BM

Large ribosomal subunit protein eL15

Chain Bk

C2H2-type domain-containing protein