HL_9SRD_012

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CGACGAG

Length

7 nucleotides

Bulged bases

9SRD|1|1|C|393

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRD_012 not in the Motif Atlas

Homologous match to HL_4V9F_009

Geometric discrepancy: 0.3856

The information below is about HL_4V9F_009

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9SRD|1|1|C|390
9SRD|1|1|G|391
9SRD|1|1|A|392
9SRD|1|1|C|393
9SRD|1|1|G|394
9SRD|1|1|A|395
9SRD|1|1|G|396

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain Bk

C2H2-type domain-containing protein