HL_9SRD_019

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GGCGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRD_019 not in the Motif Atlas

Homologous match to HL_4V9F_017

Geometric discrepancy: 0.104

The information below is about HL_4V9F_017

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9SRD|1|1|G|726
9SRD|1|1|G|727
9SRD|1|1|C|728
9SRD|1|1|G|729
9SRD|1|1|A|730
9SRD|1|1|C|731

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BK

Large ribosomal subunit protein eL14

Chain Bc

Large ribosomal subunit protein eL33

Chain Bl

Large ribosomal subunit protein eL20