HL_9SRD_021

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GGUUAAGC

Length

8 nucleotides

Bulged bases

9SRD|1|1|A|824

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRD_021 not in the Motif Atlas

Homologous match to HL_4V9F_019

Geometric discrepancy: 0.4767

The information below is about HL_4V9F_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25795.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9SRD|1|1|G|819
9SRD|1|1|G|820
9SRD|1|1|U|821
9SRD|1|1|U|822
9SRD|1|1|A|823
9SRD|1|1|A|824
9SRD|1|1|G|825
9SRD|1|1|C|826

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BD

Large ribosomal subunit protein uL4

Chain BU

Large ribosomal subunit protein uL24