HL_9SRD_026

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

AUGUGCAGUU

Length

10 nucleotides

Bulged bases

9SRD|1|1|U|998, 9SRD|1|1|G|1002, 9SRD|1|1|U|1003

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRD_026 not in the Motif Atlas

Homologous match to HL_4V9F_024

Geometric discrepancy: 0.1029

The information below is about HL_4V9F_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50204.3

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

12

Unit IDs

9SRD|1|1|A|995
9SRD|1|1|U|996
9SRD|1|1|G|997
9SRD|1|1|U|998
9SRD|1|1|G|999
9SRD|1|1|C|1000
9SRD|1|1|A|1001
9SRD|1|1|G|1002
9SRD|1|1|U|1003
9SRD|1|1|U|1004

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BC

Large ribosomal subunit protein uL3

Chain BS

Large ribosomal subunit protein uL22

Chain Be

Large ribosomal subunit protein eL37