HL_9SRD_031
3D structure
- PDB id
- 9SRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- GGAACAAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9SRD_031 not in the Motif Atlas
- Homologous match to HL_4V9F_029
- Geometric discrepancy: 0.2786
- The information below is about HL_4V9F_029
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_47171.3
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
9SRD|1|1|G|1229
9SRD|1|1|G|1230
9SRD|1|1|A|1231
9SRD|1|1|A|1232
9SRD|1|1|C|1233
9SRD|1|1|A|1234
9SRD|1|1|A|1235
9SRD|1|1|C|1236
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain BY
- Large ribosomal subunit protein uL30
- Chain Bb
- Large ribosomal subunit protein eL32
- Chain Bc
- Large ribosomal subunit protein eL33
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