HL_9SRD_034

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CGAUUG

Length

6 nucleotides

Bulged bases

9SRD|1|1|A|1430, 9SRD|1|1|U|1431, 9SRD|1|1|U|1432

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRD_034 not in the Motif Atlas

Geometric match to HL_9E6Q_067

Geometric discrepancy: 0.2363

The information below is about HL_9E6Q_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.10

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

9SRD|1|1|C|1428
9SRD|1|1|G|1429
9SRD|1|1|A|1430
9SRD|1|1|U|1431
9SRD|1|1|U|1432
9SRD|1|1|G|1433

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain B6

30S ribosomal protein S24e

Chain BD

Large ribosomal subunit protein uL4

Chain BL

Large ribosomal subunit protein uL15

Chain BP

Large ribosomal subunit protein eL18