HL_9SRD_039
3D structure
- PDB id
- 9SRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- GUUAAUAUUC
- Length
- 10 nucleotides
- Bulged bases
- 9SRD|1|1|U|1658, 9SRD|1|1|U|1659
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9SRD_039 not in the Motif Atlas
- Homologous match to HL_4V9F_037
- Geometric discrepancy: 0.0996
- The information below is about HL_4V9F_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_77449.3
- Basepair signature
- cWW-tWH-F-F-F-F
- Number of instances in this motif group
- 16
Unit IDs
9SRD|1|1|G|1651
9SRD|1|1|U|1652
9SRD|1|1|U|1653
9SRD|1|1|A|1654
9SRD|1|1|A|1655
9SRD|1|1|U|1656
9SRD|1|1|A|1657
9SRD|1|1|U|1658
9SRD|1|1|U|1659
9SRD|1|1|C|1660
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BQ
- Large ribosomal subunit protein eL19
- Chain BT
- Large ribosomal subunit protein uL23
- Chain Bd
- Large ribosomal subunit protein eL34
- Chain Bf
- Large ribosomal subunit protein eL39
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