HL_9SRD_040

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GGCAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRD_040 not in the Motif Atlas

Geometric match to HL_2Z75_004

Geometric discrepancy: 0.0595

The information below is about HL_2Z75_004

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9SRD|1|1|G|1682
9SRD|1|1|G|1683
9SRD|1|1|C|1684
9SRD|1|1|A|1685
9SRD|1|1|A|1686
9SRD|1|1|C|1687

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain B5

Large ribosomal subunit protein eL14

Chain Bd

Large ribosomal subunit protein eL34