HL_9SRD_045

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

(4AC)GACACAG

Length

8 nucleotides

Bulged bases

9SRD|1|1|A|1889, 9SRD|1|1|A|1891

QA status

Modified nucleotides: 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRD_045 not in the Motif Atlas

Homologous match to HL_4V9F_042

Geometric discrepancy: 0.0931

The information below is about HL_4V9F_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

9SRD|1|1|4AC|1885
9SRD|1|1|G|1886
9SRD|1|1|A|1887
9SRD|1|1|C|1888
9SRD|1|1|A|1889
9SRD|1|1|C|1890
9SRD|1|1|A|1891
9SRD|1|1|G|1892

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BS

Large ribosomal subunit protein uL22

Chain Be

Large ribosomal subunit protein eL37

Chain Bf

Large ribosomal subunit protein eL39