HL_9SRD_047

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

9SRD|1|1|U|1969

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRD_047 not in the Motif Atlas

Homologous match to HL_4V9F_044

Geometric discrepancy: 0.0595

The information below is about HL_4V9F_044

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.6

Basepair signature

cWW-tSW-F

Number of instances in this motif group

67

Unit IDs

9SRD|1|1|C|1967
9SRD|1|1|U|1968
9SRD|1|1|U|1969
9SRD|1|1|C|1970
9SRD|1|1|G|1971
9SRD|1|1|G|1972

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain A0

Small ribosomal subunit protein eS32

Chain Bi

Large ribosomal subunit protein eL43