HL_9SRD_048

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

UGCGUAA

Length

7 nucleotides

Bulged bases

9SRD|1|1|U|1996

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRD_048 not in the Motif Atlas

Homologous match to HL_4V9F_045

Geometric discrepancy: 0.291

The information below is about HL_4V9F_045

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9SRD|1|1|U|1992
9SRD|1|1|G|1993
9SRD|1|1|C|1994
9SRD|1|1|G|1995
9SRD|1|1|U|1996
9SRD|1|1|A|1997
9SRD|1|1|A|1998

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BQ

Large ribosomal subunit protein eL19