HL_9SRD_052

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GGUACAAC

Length

8 nucleotides

Bulged bases

9SRD|1|1|A|2119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRD_052 not in the Motif Atlas

Homologous match to HL_4V9F_049

Geometric discrepancy: 0.342

The information below is about HL_4V9F_049

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_28253.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

9SRD|1|1|G|2116
9SRD|1|1|G|2117
9SRD|1|1|U|2118
9SRD|1|1|A|2119
9SRD|1|1|C|2120
9SRD|1|1|A|2121
9SRD|1|1|A|2122
9SRD|1|1|C|2123

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain Bj

Large ribosomal subunit protein eL42